Oct 06, 2020 · The NMDS ordination plot (Fig. 1a) depicted floristic variation among and within the three main vegetation types. Across vegetation types, the centroid of lupine cover class 1 was closer to cover class 2 than to class 3 and 4, while the latter were situated very close together (Table 1 ).
provide ordination space “coordinates” for each plot/sample/site along each axis (dimension). These coordinates can be used to make scatterplots depicting the ordination in two dimensions of your choosing. First, assign the output to a name (‘metaMDS.output’ in this example). metaMDS.output=metaMDS(dist.matrix, k=3, trymax=50, maxit=50,